Image credit: DALL-E
A collection of code that may be useful to others.
Camformers' submission to DREAM 2022
A convolutional neural network developed for the DREAM 2022 challenge "Predicting gene expression using millions of random promoter sequences" [code]. This submission took 4th place in the challenge.
Code related to previous projects/papers
- Retrieval and analysis of the piRNA cluster database [code] used in Bornelöv et al., 2022 [paper].
- Determination of genome of origin for allele-specific mapping [code].
- Analysis pipeline for RNA bisulfite sequencing data [code] used in Sajini et al., 2019 [paper] and Selmi et al., 2021 [paper].